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FISH-quant v2: a scalable and modular tool for smFISH image analysis.
Imbert A, Ouyang W, Safieddine A, Coleno E, Zimmer C, Bertrand E, Walter T, Mueller F. Imbert A, et al. Among authors: safieddine a. RNA. 2022 Jun;28(6):786-795. doi: 10.1261/rna.079073.121. Epub 2022 Mar 28. RNA. 2022. PMID: 35347070 Free PMC article.
A computational framework to study sub-cellular RNA localization.
Samacoits A, Chouaib R, Safieddine A, Traboulsi AM, Ouyang W, Zimmer C, Peter M, Bertrand E, Walter T, Mueller F. Samacoits A, et al. Among authors: safieddine a. Nat Commun. 2018 Nov 2;9(1):4584. doi: 10.1038/s41467-018-06868-w. Nat Commun. 2018. PMID: 30389932 Free PMC article.
A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport.
Safieddine A, Coleno E, Salloum S, Imbert A, Traboulsi AM, Kwon OS, Lionneton F, Georget V, Robert MC, Gostan T, Lecellier CH, Chouaib R, Pichon X, Le Hir H, Zibara K, Mueller F, Walter T, Peter M, Bertrand E. Safieddine A, et al. Nat Commun. 2021 Mar 1;12(1):1352. doi: 10.1038/s41467-021-21585-7. Nat Commun. 2021. PMID: 33649340 Free PMC article.
A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting.
Chouaib R, Safieddine A, Pichon X, Imbert A, Kwon OS, Samacoits A, Traboulsi AM, Robert MC, Tsanov N, Coleno E, Poser I, Zimmer C, Hyman A, Le Hir H, Zibara K, Peter M, Mueller F, Walter T, Bertrand E. Chouaib R, et al. Among authors: safieddine a. Dev Cell. 2020 Sep 28;54(6):773-791.e5. doi: 10.1016/j.devcel.2020.07.010. Epub 2020 Aug 11. Dev Cell. 2020. PMID: 32783880 Free article.